STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17529.1alanine--tRNA ligase; KEGG: gvh:HMPREF9231_0443 0. alaS; alanine--tRNA ligase K01872; Psort location: Cytoplasmic, score: 9.97. (895 aa)    
Predicted Functional Partners:
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.970
KXA17602.1
Hypothetical protein; KEGG: ase:ACPL_6362 3.9e-24 Replicase polyprotein 1ab; Psort location: Cytoplasmic, score: 7.50.
   
 0.947
KXA17146.1
Hypothetical protein; KEGG: ssr:SALIVB_0977 6.2e-49 signal transduction histidine kinase, LytS; Psort location: CytoplasmicMembrane, score: 10.00.
   
 0.947
KXA16961.1
Tetratricopeptide repeat protein; KEGG: scl:sce8649 4.2e-05 protein kinase.
   
 0.947
KXA15303.1
Tetratricopeptide repeat protein; Psort location: Cytoplasmic, score: 7.50.
   
 0.947
KXA17530.1
RNAse H domain protein, YqgF family; KEGG: gvg:HMPREF0421_21092 1.9e-72 putative Holliday junction resolvase; K07447 putative holliday junction resolvase.
  
  
 0.939
AspS
aspartate--tRNA ligase; KEGG: gvg:HMPREF0421_20832 0. aspS; aspartate--tRNA ligase K01876; Psort location: Cytoplasmic, score: 10.00.
 
  
 0.934
KXA15154.1
RecA protein; KEGG: jde:Jden_1041 1.7e-135 recA protein K03553; Psort location: Cytoplasmic, score: 9.97.
 
 0.912
KXA17531.1
YceG family protein; KEGG: aai:AARI_17280 1.3e-46 aminodeoxychorismate lyase K07082.
  
    0.897
KXA16185.1
Trypsin; KEGG: gvg:HMPREF0421_20188 6.7e-258 htrA; serine protease HtrA K08372.
  
 
 0.897
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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