STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17462.1Hydrolase, TatD family; KEGG: gvh:HMPREF9231_1264 3.7e-170 TatD family hydrolase; K03424 TatD DNase family protein; Psort location: Cytoplasmic, score: 9.97. (326 aa)    
Predicted Functional Partners:
KXA15944.1
KEGG: gvh:HMPREF9231_1395 2.3e-129 ksgA; dimethyladenosine transferase K02528; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.937
KXA15623.1
G5 domain protein; KEGG: bde:BDP_0983 3.2e-15 TraG-like protein.
 
   
 0.837
KXA16210.1
methionine--tRNA ligase; KEGG: gvg:HMPREF0421_20283 0. metG; methionine--tRNA ligase K01874; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.792
KXA16200.1
dTMP kinase; KEGG: gvh:HMPREF9231_1283 1.8e-106 tmk; dTMP kinase K00943; Psort location: Cytoplasmic, score: 7.50.
    
 0.774
KXA15135.1
Ribosome biogenesis GTPase Der; KEGG: bbp:BBPR_1002 5.1e-292 GTP-binding protein K03977; Psort location: Cytoplasmic, score: 9.95.
  
  
 0.764
KXA17463.1
Potassium transporter; Psort location: CytoplasmicMembrane, score: 10.00.
       0.763
KXA16206.1
KEGG: gvh:HMPREF9231_1276 6.7e-139 S-adenosylmethionine-dependent methyltransferase, YraL family; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.682
KXA17057.1
KEGG: gvh:HMPREF9231_0973 3.1e-276 GMP synthase; K01951 GMP synthase (glutamine-hydrolysing); Psort location: Cytoplasmic, score: 7.50.
     
 0.678
KXA16297.1
KEGG: bde:BDP_1927 1.7e-149 Maf-like protein K06287; Psort location: Cytoplasmic, score: 7.50.
  
    0.644
KXA17138.1
TENA/THI-4 family protein; KEGG: gvh:HMPREF9231_0569 6.9e-114 TENA/THI-4 family protein; K03707 thiaminase (transcriptional activator TenA).
       0.628
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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