STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17250.1Single-strand binding family protein. (196 aa)    
Predicted Functional Partners:
KXA16979.1
DNA polymerase III, alpha subunit; KEGG: gvg:HMPREF0421_20519 0. dnaE; DNA-directed DNA polymerase III subunit alpha K02337; Psort location: Cytoplasmic, score: 9.97.
   
 0.882
KXA16201.1
KEGG: gvh:HMPREF9231_1282 1.2e-185 putative DNA polymerase III, delta' subunit; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.833
KXA15254.1
Hypothetical protein; KEGG: gvg:HMPREF0421_20763 0. priA; DNA replication factor Y; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase).
   
 0.830
KXA15976.1
KEGG: gvh:HMPREF9231_1326 2.1e-277 dnaX; DNA polymerase III, subunit gamma and tau K02343; Psort location: Cytoplasmic, score: 9.97.
   
 0.809
KXA16199.1
DNA topoisomerase I; KEGG: gvh:HMPREF9231_1284 0. topA; DNA topoisomerase I K03168; Psort location: Cytoplasmic, score: 9.67.
  
 
 0.775
KXA15730.1
Ribonuclease HI; KEGG: gvh:HMPREF9231_1169 8.8e-153 rnhA; ribonuclease HI K03469.
   
 
 0.749
KXA17253.1
Oligoribonuclease; KEGG: gvh:HMPREF9231_0631 8.6e-123 orn; oligoribonuclease K13288; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.731
KXA15366.1
KEGG: gvh:HMPREF9231_0826 1.1e-152 putative DNA polymerase III, delta subunit; K02340 DNA polymerase III subunit delta; Psort location: Cellwall, score: 8.19.
 
  
 0.725
PrfB
KEGG: rha:RHA1_ro06404 3.7e-115 prfB; peptide chain release factor 2 K02836; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.664
KXA15949.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 8.16.
  
    0.652
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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