STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PrfAKEGG: rha:RHA1_ro01483 3.5e-94 prfA; peptide chain release factor 1 K02835; Psort location: Cytoplasmic, score: 9.97. (365 aa)    
Predicted Functional Partners:
KXA17260.1
KEGG: gvg:HMPREF0421_20946 1.4e-145 hemK; protein-(glutamine-N5) methyltransferase K02493; Psort location: Cytoplasmic, score: 7.50.
 
 0.998
Frr
Ribosome recycling factor; KEGG: pmj:P9211_05231 2.1e-41 frr; ribosome recycling factor K02838; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.996
RpmE
Ribosomal protein L31; KEGG: apb:SAR116_2278 2.6e-11 50S ribosomal protein L31 K02909; Psort location: Cytoplasmic, score: 9.67.
  
 
 0.980
KXA15680.1
Ribosomal protein L13; KEGG: apb:SAR116_0493 9.2e-32 50S ribosomal protein L13 K02871; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.976
RpsI
Ribosomal protein S9; KEGG: apb:SAR116_0492 2.7e-25 30S ribosomal protein S9 K02996; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.973
RplC
KEGG: apb:SAR116_2391 1.6e-43 50S ribosomal protein L3 K02906; Psort location: Cytoplasmic, score: 9.67.
 
 
 0.965
RplS
Ribosomal protein L19; KEGG: scp:HMPREF0833_10394 3.2e-29 argB; acetylglutamate kinase K02884; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.964
RplQ
Ribosomal protein L17; KEGG: apb:SAR116_2416 1.9e-22 50S ribosomal protein L17 K02879; Psort location: Cytoplasmic, score: 9.67.
  
 
 0.962
KXA16448.1
Ribosomal protein L9; KEGG: apb:SAR116_0644 3.0e-17 50S ribosomal protein L9 K02939; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.961
RpsG
Ribosomal protein S7; KEGG: apb:SAR116_2387 2.0e-45 30S ribosomal protein S7 K02992.
 
 
 0.958
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.