STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17216.1KEGG: bde:BDP_1040 3.4e-41 histidine triad (hIT) protein K02503; Psort location: Cytoplasmic, score: 7.50. (122 aa)    
Predicted Functional Partners:
KXA17214.1
Translation metalloprotein YbeY; KEGG: aai:AARI_16830 1.9e-38 metalloprotease K07042; Psort location: Cytoplasmic, score: 7.50.
   
   0.945
KXA17212.1
Ribosome biogenesis GTPase Era; KEGG: reh:H16_A2554 4.6e-37 era; GTP-binding protein Era K03595; Psort location: CytoplasmicMembrane, score: 8.78.
   
   0.941
KXA17215.1
PhoH-like domain protein; KEGG: cnc:CNE_1c05490 3.5e-62 phoH; phosphate starvation-inducible protein PhoH K06217; Psort location: Cytoplasmic, score: 9.97.
       0.927
KXA17217.1
RNA methyltransferase; KEGG: gvh:HMPREF9231_0612 8.9e-137 RsmE family RNA methyltransferase K09761; Psort location: Cytoplasmic, score: 7.50.
    
 0.923
KXA17213.1
CBS domain protein; KEGG: eci:UTI89_C0656 5.9e-37 ybeX; transport protein K06189; Psort location: CytoplasmicMembrane, score: 9.99.
     
 0.913
RpoC
KEGG: gvg:HMPREF0421_21208 0. rpoC; DNA-directed RNA polymerase subunit beta prime K03046; Psort location: Cytoplasmic, score: 9.97.
   
 0.857
RpoA
KEGG: gvh:HMPREF9231_0263 6.9e-169 rpoA; DNA-directed RNA polymerase subunit alpha K03040; Psort location: Cytoplasmic, score: 9.97.
    
 0.841
rpoZ
KEGG: gvg:HMPREF0421_20761 2.2e-46 rpoZ; DNA-directed RNA polymerase subunit omega K03060.
  
 
 0.818
RpoB
KEGG: gvg:HMPREF0421_21209 0. rpoB; DNA-directed RNA polymerase subunit beta K03043; Psort location: Cytoplasmic, score: 9.97.
    
 0.812
KXA17600.1
KEGG: gvh:HMPREF9231_0958 2.9e-115 rrmJ; ribosomal RNA large subunit methyltransferase J K06442; Psort location: Cytoplasmic, score: 7.50.
      0.790
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.