STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17221.1Hypothetical protein; KEGG: dpp:DICPUDRAFT_150076 2.1e-07 hypothetical protein; K14437 chromodomain-helicase-DNA-binding protein 7. (400 aa)    
Predicted Functional Partners:
KXA17587.1
DNA gyrase, B subunit protein; KEGG: gvg:HMPREF0421_20607 0. gyrB2; DNA topoisomerase subunit B K02470; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.773
GyrB
KEGG: gvh:HMPREF9231_0006 0. gyrB_1; DNA gyrase subunit B K02470; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.773
KXA16833.1
Putative membrane protein; KEGG: bqy:MUS_4455 6.2e-33 ydeD; phosphate acetyltransferase (phosphotransacetylase); Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.766
KXA17034.1
LysM domain protein; KEGG: tbe:Trebr_0866 7.3e-05 Lytic transglycosylase catalytic; K08307 membrane-bound lytic murein transglycosylase D.
   
 
 0.758
KXA17191.1
KEGG: gvg:HMPREF0421_20970 1.1e-72 pdxH; pyridoxamine 5'-phosphate oxidase K07006; Psort location: Cytoplasmic, score: 7.50.
       0.743
KXA17077.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.737
KXA16941.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.731
KXA17222.1
Putative membrane protein; KEGG: bqy:MUS_4455 1.8e-09 ydeD; phosphate acetyltransferase (phosphotransacetylase); Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.724
KXA17196.1
KEGG: gvh:HMPREF9231_0599 7.7e-241 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042; Psort location: Cytoplasmic, score: 9.97.
     
 0.706
KXA17195.1
Iojap-like protein; KEGG: mul:MUL_3692 2.8e-21 nadD; bifunctional nicotinate-nucleotide adenylyltransferase NadD/hypothetical protein; K00969 nicotinate-nucleotide adenylyltransferase; Psort location: Cytoplasmic, score: 7.50.
     
 0.701
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.