STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17130.1BNR/Asp-box repeat protein; KEGG: bbp:BBPR_1794 9.0e-144 exo-alpha-sialidase K01186; Psort location: Extracellular, score: 9.98. (811 aa)    
Predicted Functional Partners:
KXA15876.1
Dihydrodipicolinate synthetase family protein; KEGG: gvh:HMPREF9231_0059 5.9e-163 dihydrodipicolinate synthase K01714; Psort location: Cytoplasmic, score: 9.67.
 
   
 0.796
KXA15878.1
KEGG: gvg:HMPREF0421_20178 0. ABC transporter ATP-binding protein K02031:K02034; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.739
KXA15880.1
ABC transporter, substrate-binding protein, family 5; KEGG: ckl:CKL_1049 1.1e-37 oppA1; OppA1 K02035; Psort location: Cellwall, score: 9.21.
 
   
 0.655
KXA15882.1
ROK family protein; KEGG: gvg:HMPREF0421_20174 6.7e-155 glcK; putative glucokinase K00845; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.518
KXA15873.1
Transcriptional regulator, GntR family; KEGG: ecf:ECH74115_0120 7.9e-08 pdhR; transcriptional regulator PdhR K05799; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.513
KXA15881.1
Putative N-acetylmannosamine-6-P epimerase; KEGG: gvh:HMPREF9231_0054 9.2e-119 thiazole biosynthesis protein ThiG-like protein; K01788 N-acylglucosamine-6-phosphate 2-epimerase; Psort location: Cytoplasmic, score: 7.50.
     
 0.501
KXA15528.1
Hypothetical protein; KEGG: ddi:DDB_G0268430 2.6e-06 hypothetical protein; K15255 ATP-dependent DNA helicase PIF1.
 
   
 0.461
KXA17129.1
Acetyltransferase, GNAT family; KEGG: atm:ANT_29020 1.1e-06 putative acetyltransferase K03789.
       0.415
KXA15883.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.410
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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