STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RpsAKEGG: bde:BDP_0900 1.0e-238 rpsA; 30S ribosomal protein S1 K02945; Psort location: Cytoplasmic, score: 9.97. (501 aa)    
Predicted Functional Partners:
KXA16970.1
KEGG: gvg:HMPREF0421_20524 0. hrpA; ATP-dependent helicase HrpA; K03578 ATP-dependent helicase HrpA; Psort location: Cytoplasmic, score: 7.50.
  
 0.999
KXA17048.1
DEAD/DEAH box helicase; KEGG: gvg:HMPREF0421_20422 3.3e-256 ppx; exopolyphosphatase; Psort location: Cytoplasmic, score: 9.97.
  
 0.999
RpsD
Ribosomal protein S4; KEGG: ctu:CTU_38240 1.2e-27 rpsD; 30S ribosomal protein S4 K02986; Psort location: Cytoplasmic, score: 7.50.
  
 0.999
KXA15700.1
Ribosomal protein S5; KEGG: apb:SAR116_2408 1.1e-35 30S ribosomal protein S5 K02988; Psort location: Cytoplasmic, score: 9.97.
  
 0.999
RpsK
KEGG: apb:SAR116_2414 5.7e-39 30S ribosomal protein S11 K02948; Psort location: Cytoplasmic, score: 9.67.
  
 0.999
KXA15540.1
3'-5' exonuclease; KEGG: gvg:HMPREF0421_20636 1.1e-239 hypothetical protein; K03684 ribonuclease D; Psort location: Cytoplasmic, score: 9.97.
 
 0.997
RpsG
Ribosomal protein S7; KEGG: apb:SAR116_2387 2.0e-45 30S ribosomal protein S7 K02992.
  
 0.996
RpsH
Ribosomal protein S8; KEGG: apb:SAR116_2405 5.5e-25 30S ribosomal protein S8 K02994; Psort location: Cytoplasmic, score: 9.97.
  
 0.995
KXA15331.1
Ribosomal protein S2; KEGG: apb:SAR116_0519 6.5e-54 30S ribosomal protein S2 K02967; Psort location: Cytoplasmic, score: 9.97.
  
 0.995
RpsL
Ribosomal protein S12; KEGG: apb:SAR116_2386 2.0e-45 30S ribosomal protein S12 K02950; Psort location: Cytoplasmic, score: 9.97.
  
 0.993
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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