STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17139.1YhgE/Pip domain protein; KEGG: pkn:PKH_142780 3.5e-08 dihydropteroate synthase; K00796 dihydropteroate synthase K00950; Psort location: CytoplasmicMembrane, score: 10.00. (697 aa)    
Predicted Functional Partners:
KXA17140.1
Hypothetical protein; KEGG: gvg:HMPREF0421_21012 1.5e-109 ABC transporter ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.55.
 
   
 0.937
KXA17568.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
  0.802
KXA15948.1
KEGG: gvg:HMPREF0421_20105 5.3e-194 ABC transporter ATP-binding protein K10243; Psort location: CytoplasmicMembrane, score: 9.96.
    
 0.694
KXA15830.1
KEGG: bde:BDP_0387 4.3e-128 pstS; phosphate-binding protein K02040.
    
 0.674
KXA16667.1
ABC transporter, substrate-binding protein, family 5; KEGG: kra:Krad_1125 6.5e-118 4-phytase K02035; Psort location: Cellwall, score: 9.21.
    
  0.667
KXA16990.1
KEGG: gvg:HMPREF0421_20508 3.0e-143 uppS; Di-trans,poly-cis-decaprenylcistransferase K00806; Psort location: Cytoplasmic, score: 9.97.
     
 0.643
KXA16995.1
DNA repair protein RecO.
       0.633
KXA17567.1
ABC-2 type transporter; Psort location: CytoplasmicMembrane, score: 10.00.
    
  0.583
KXA16817.1
ABC-2 type transporter; Psort location: CytoplasmicMembrane, score: 10.00.
    
  0.583
KXA17621.1
Anchored repeat-type ABC transporter, permease subunit; KEGG: apb:SAR116_2225 1.3e-30 zinc ABC transporter membrane spanning protein K09816; Psort location: CytoplasmicMembrane, score: 10.00.
    
  0.532
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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