STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17071.1Dinuclear metal center protein, YbgI family; KEGG: hip:CGSHiEE_02770 1.5e-05 seryl-tRNA synthetase; Psort location: Cytoplasmic, score: 7.50. (285 aa)    
Predicted Functional Partners:
KXA17072.1
KEGG: gvh:HMPREF9231_0991 0. polA; DNA-directed DNA polymerase K02335; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.878
KXA17073.1
Response regulator receiver domain protein; KEGG: bde:BDP_0990 3.4e-96 two-component system response regulator K07183; Psort location: Cytoplasmic, score: 9.97.
       0.814
KXA15135.1
Ribosome biogenesis GTPase Der; KEGG: bbp:BBPR_1002 5.1e-292 GTP-binding protein K03977; Psort location: Cytoplasmic, score: 9.95.
  
  
 0.733
KXA17066.1
KEGG: gvh:HMPREF9231_0984 0. glgX; glycogen debranching protein GlgX K02438; Psort location: Cytoplasmic, score: 9.97.
       0.692
KXA17047.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.659
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.647
KXA16814.1
Putative dTDP-4-dehydrorhamnose reductase; KEGG: gvg:HMPREF0421_20400 3.7e-257 rmlCD; bifunctional dTDP-4-keto-L-rhamnose reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase; K00067 dTDP-4-dehydrorhamnose reductase K01790; Psort location: Cytoplasmic, score: 7.50.
     
 0.645
KXA16671.1
3-dehydroquinate synthase; KEGG: gvg:HMPREF0421_21086 6.5e-276 aroB; 3-dehydroquinate synthase K13829; Psort location: Cytoplasmic, score: 9.97.
       0.634
KXA16947.1
Low molecular weight phosphotyrosine protein phosphatase; KEGG: gvg:HMPREF0421_20549 8.4e-93 ptpA; putative protein-tyrosine-phosphatase K01104; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.610
Pyk
Pyruvate kinase; KEGG: gvg:HMPREF0421_20976 5.7e-261 pyk; pyruvate kinase K00873; Psort location: Cytoplasmic, score: 7.50.
   
 
 0.601
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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