STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16971.1Hypothetical protein; KEGG: gva:HMPREF0424_0577 8.0e-17 inosine-uridine preferring nucleoside hydrolase; K01239 purine nucleosidase. (58 aa)    
Predicted Functional Partners:
KXA16972.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.550
KXA16973.1
GIY-YIG catalytic domain protein.
       0.466
KXA15207.1
Alanine racemase; KEGG: gvg:HMPREF0421_20911 4.2e-233 alr; alanine racemase K01775; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.418
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.