KXA17021.1 protein (Gardnerella vaginalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KXA17021.1

KEGG: gvh:HMPREF9231_1083 1.4e-177 putative undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; Psort location: CytoplasmicMembrane, score: 8.78. (414 aa)

Predicted Functional Partners:

KXA17020.1

0.999

KXA17022.1

0.998

KXA17023.1

0.994

KXA17024.1

0.994

KXA17025.1

0.990

KXA17019.1

0.981

KXA16856.1

0.975

KXA16985.1

0.971

KXA17027.1

0.970

KXA15668.1

0.955

Your Current Organism:

Gardnerella vaginalis

NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXA15668.1	KXA16856.1	HMPREF3204_00932	HMPREF3204_00398	KEGG: gvh:HMPREF9231_0227 1.6e-210 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain protein; K00075 UDP-N-acetylmuramate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; KEGG: gvh:HMPREF9231_0354 2.2e-213 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase K01928; Psort location: Cytoplasmic, score: 7.50.	0.869
KXA15668.1	KXA16985.1	HMPREF3204_00932	HMPREF3204_00274	KEGG: gvh:HMPREF9231_0227 1.6e-210 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain protein; K00075 UDP-N-acetylmuramate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.	KEGG: suy:SA2981_1144 7.7e-87 ftsZ; Cell division protein FtsZ K03531; Psort location: Cytoplasmic, score: 7.50.	0.719
KXA15668.1	KXA17019.1	HMPREF3204_00932	HMPREF3204_00311	KEGG: gvh:HMPREF9231_0227 1.6e-210 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain protein; K00075 UDP-N-acetylmuramate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.	POTRA domain protein, FtsQ-type.	0.773
KXA15668.1	KXA17020.1	HMPREF3204_00932	HMPREF3204_00312	KEGG: gvh:HMPREF9231_0227 1.6e-210 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain protein; K00075 UDP-N-acetylmuramate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.	KEGG: gvh:HMPREF9231_1082 1.3e-224 murC; UDP-N-acetylmuramate--L-alanine ligase K01924; Psort location: Cytoplasmic, score: 7.50.	0.993
KXA15668.1	KXA17021.1	HMPREF3204_00932	HMPREF3204_00313	KEGG: gvh:HMPREF9231_0227 1.6e-210 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain protein; K00075 UDP-N-acetylmuramate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.	KEGG: gvh:HMPREF9231_1083 1.4e-177 putative undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; Psort location: CytoplasmicMembrane, score: 8.78.	0.955
KXA15668.1	KXA17022.1	HMPREF3204_00932	HMPREF3204_00314	KEGG: gvh:HMPREF9231_0227 1.6e-210 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain protein; K00075 UDP-N-acetylmuramate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.	KEGG: kfl:Kfla_2886 8.3e-54 cell division protein FtsW; Psort location: CytoplasmicMembrane, score: 10.00.	0.741
KXA15668.1	KXA17023.1	HMPREF3204_00932	HMPREF3204_00315	KEGG: gvh:HMPREF9231_0227 1.6e-210 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain protein; K00075 UDP-N-acetylmuramate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.	KEGG: gvg:HMPREF0421_20472 8.7e-233 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925; Psort location: Cytoplasmic, score: 9.97.	0.926
KXA15668.1	KXA17024.1	HMPREF3204_00932	HMPREF3204_00316	KEGG: gvh:HMPREF9231_0227 1.6e-210 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain protein; K00075 UDP-N-acetylmuramate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.	KEGG: gvh:HMPREF9231_1086 2.5e-187 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000; Psort location: CytoplasmicMembrane, score: 10.00.	0.905
KXA15668.1	KXA17025.1	HMPREF3204_00932	HMPREF3204_00317	KEGG: gvh:HMPREF9231_0227 1.6e-210 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain protein; K00075 UDP-N-acetylmuramate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.	KEGG: gvh:HMPREF9231_1087 5.0e-198 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929; Psort location: Cytoplasmic, score: 9.97.	0.937
KXA15668.1	KXA17027.1	HMPREF3204_00932	HMPREF3204_00319	KEGG: gvh:HMPREF9231_0227 1.6e-210 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain protein; K00075 UDP-N-acetylmuramate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.	KEGG: gvh:HMPREF9231_1089 1.0e-293 penicillin-binding protein, transpeptidase domain protein; K03587 cell division protein FtsI (penicillin-binding protein 3); Psort location: CytoplasmicMembrane, score: 9.51.	0.808
KXA16856.1	KXA15668.1	HMPREF3204_00398	HMPREF3204_00932	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; KEGG: gvh:HMPREF9231_0354 2.2e-213 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase K01928; Psort location: Cytoplasmic, score: 7.50.	KEGG: gvh:HMPREF9231_0227 1.6e-210 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain protein; K00075 UDP-N-acetylmuramate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.	0.869
KXA16856.1	KXA16985.1	HMPREF3204_00398	HMPREF3204_00274	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; KEGG: gvh:HMPREF9231_0354 2.2e-213 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase K01928; Psort location: Cytoplasmic, score: 7.50.	KEGG: suy:SA2981_1144 7.7e-87 ftsZ; Cell division protein FtsZ K03531; Psort location: Cytoplasmic, score: 7.50.	0.893
KXA16856.1	KXA17019.1	HMPREF3204_00398	HMPREF3204_00311	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; KEGG: gvh:HMPREF9231_0354 2.2e-213 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase K01928; Psort location: Cytoplasmic, score: 7.50.	POTRA domain protein, FtsQ-type.	0.827
KXA16856.1	KXA17020.1	HMPREF3204_00398	HMPREF3204_00312	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; KEGG: gvh:HMPREF9231_0354 2.2e-213 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase K01928; Psort location: Cytoplasmic, score: 7.50.	KEGG: gvh:HMPREF9231_1082 1.3e-224 murC; UDP-N-acetylmuramate--L-alanine ligase K01924; Psort location: Cytoplasmic, score: 7.50.	0.963
KXA16856.1	KXA17021.1	HMPREF3204_00398	HMPREF3204_00313	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; KEGG: gvh:HMPREF9231_0354 2.2e-213 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase K01928; Psort location: Cytoplasmic, score: 7.50.	KEGG: gvh:HMPREF9231_1083 1.4e-177 putative undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; Psort location: CytoplasmicMembrane, score: 8.78.	0.975
KXA16856.1	KXA17022.1	HMPREF3204_00398	HMPREF3204_00314	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; KEGG: gvh:HMPREF9231_0354 2.2e-213 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase K01928; Psort location: Cytoplasmic, score: 7.50.	KEGG: kfl:Kfla_2886 8.3e-54 cell division protein FtsW; Psort location: CytoplasmicMembrane, score: 10.00.	0.893
KXA16856.1	KXA17023.1	HMPREF3204_00398	HMPREF3204_00315	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; KEGG: gvh:HMPREF9231_0354 2.2e-213 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase K01928; Psort location: Cytoplasmic, score: 7.50.	KEGG: gvg:HMPREF0421_20472 8.7e-233 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925; Psort location: Cytoplasmic, score: 9.97.	0.956
KXA16856.1	KXA17024.1	HMPREF3204_00398	HMPREF3204_00316	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; KEGG: gvh:HMPREF9231_0354 2.2e-213 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase K01928; Psort location: Cytoplasmic, score: 7.50.	KEGG: gvh:HMPREF9231_1086 2.5e-187 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000; Psort location: CytoplasmicMembrane, score: 10.00.	0.940
KXA16856.1	KXA17025.1	HMPREF3204_00398	HMPREF3204_00317	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; KEGG: gvh:HMPREF9231_0354 2.2e-213 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase K01928; Psort location: Cytoplasmic, score: 7.50.	KEGG: gvh:HMPREF9231_1087 5.0e-198 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929; Psort location: Cytoplasmic, score: 9.97.	0.991
KXA16856.1	KXA17027.1	HMPREF3204_00398	HMPREF3204_00319	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; KEGG: gvh:HMPREF9231_0354 2.2e-213 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase K01928; Psort location: Cytoplasmic, score: 7.50.	KEGG: gvh:HMPREF9231_1089 1.0e-293 penicillin-binding protein, transpeptidase domain protein; K03587 cell division protein FtsI (penicillin-binding protein 3); Psort location: CytoplasmicMembrane, score: 9.51.	0.919

page 1 of 6

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About