STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17031.1Hypothetical protein; KEGG: bbb:BIF_01364 1.7e-245 ATP-dependent DNA helicase rep. (702 aa)    
Predicted Functional Partners:
RpoB
KEGG: gvg:HMPREF0421_21209 0. rpoB; DNA-directed RNA polymerase subunit beta K03043; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.996
RpoC
KEGG: gvg:HMPREF0421_21208 0. rpoC; DNA-directed RNA polymerase subunit beta prime K03046; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.995
rpoZ
KEGG: gvg:HMPREF0421_20761 2.2e-46 rpoZ; DNA-directed RNA polymerase subunit omega K03060.
 
 
   0.904
RpoA
KEGG: gvh:HMPREF9231_0263 6.9e-169 rpoA; DNA-directed RNA polymerase subunit alpha K03040; Psort location: Cytoplasmic, score: 9.97.
   
   0.876
KXA17026.1
Hypothetical protein; KEGG: bde:BDP_1547 1.9e-65 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase.
       0.769
KXA15297.1
KEGG: gvh:HMPREF9231_0770 0. uvrA; excinuclease ABC subunit A K03701; Psort location: Cytoplasmic, score: 7.50.
     
 0.707
KXA16656.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.655
KXA15980.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
  
     0.643
KXA17027.1
KEGG: gvh:HMPREF9231_1089 1.0e-293 penicillin-binding protein, transpeptidase domain protein; K03587 cell division protein FtsI (penicillin-binding protein 3); Psort location: CytoplasmicMembrane, score: 9.51.
     
 0.642
KXA15735.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.639
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.