STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17032.1KEGG: bme:BMEI1190 6.1e-19 nrdR; transcriptional regulator NrdR K07738; Psort location: Cytoplasmic, score: 7.50. (116 aa)    
Predicted Functional Partners:
KXA16061.1
KEGG: gvg:HMPREF0421_21332 0. nrdE; ribonucleotide-diphosphate reductase subunit alpha K00525; Psort location: Cytoplasmic, score: 7.50.
     
 0.852
KXA17034.1
LysM domain protein; KEGG: tbe:Trebr_0866 7.3e-05 Lytic transglycosylase catalytic; K08307 membrane-bound lytic murein transglycosylase D.
  
    0.820
KXA17035.1
Repressor LexA; KEGG: gvg:HMPREF0421_20459 1.4e-115 lexA; repressor lexA K01356; Psort location: Cytoplasmic, score: 7.50.
     
 0.811
KXA16060.1
KEGG: gva:HMPREF0424_0176 3.7e-193 ribonucleoside-diphosphate reductase, beta subunit K00526; Psort location: Cytoplasmic, score: 7.50.
     
 0.731
KXA17252.1
Hypothetical protein; KEGG: bde:BDP_0628 9.8e-170 helicase.
     
 0.698
KXA15135.1
Ribosome biogenesis GTPase Der; KEGG: bbp:BBPR_1002 5.1e-292 GTP-binding protein K03977; Psort location: Cytoplasmic, score: 9.95.
     
 0.696
KXA16979.1
DNA polymerase III, alpha subunit; KEGG: gvg:HMPREF0421_20519 0. dnaE; DNA-directed DNA polymerase III subunit alpha K02337; Psort location: Cytoplasmic, score: 9.97.
     
 0.640
KXA16062.1
nrdI protein; KEGG: aai:AARI_29950 3.8e-33 FMN reductase K03647; Psort location: Cytoplasmic, score: 7.50.
      
 0.584
KXA15530.1
Putative dUTP diphosphatase; KEGG: gvh:HMPREF9231_0929 1.8e-74 dut; dUTP diphosphatase K01520; Psort location: Cytoplasmic, score: 7.50.
       0.567
KXA16980.1
KEGG: gvh:HMPREF9231_1036 1.1e-127 RluA family pseudouridine synthase K06180; Psort location: Cytoplasmic, score: 9.97.
       0.559
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.