STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17035.1Repressor LexA; KEGG: gvg:HMPREF0421_20459 1.4e-115 lexA; repressor lexA K01356; Psort location: Cytoplasmic, score: 7.50. (240 aa)    
Predicted Functional Partners:
KXA15671.1
KEGG: gvh:HMPREF9231_0230 4.2e-194 ImpB/MucB/SamB family protein; K02346 DNA polymerase IV; Psort location: Cytoplasmic, score: 7.50.
 
 0.987
KXA15154.1
RecA protein; KEGG: jde:Jden_1041 1.7e-135 recA protein K03553; Psort location: Cytoplasmic, score: 9.97.
  
 0.982
KXA17034.1
LysM domain protein; KEGG: tbe:Trebr_0866 7.3e-05 Lytic transglycosylase catalytic; K08307 membrane-bound lytic murein transglycosylase D.
  
  
 0.879
KXA17032.1
KEGG: bme:BMEI1190 6.1e-19 nrdR; transcriptional regulator NrdR K07738; Psort location: Cytoplasmic, score: 7.50.
     
 0.811
KXA15298.1
Excinuclease ABC, C subunit; KEGG: gvg:HMPREF0421_20802 0. uvrC; excision endonuclease subunit UvrC K03703; Psort location: Cytoplasmic, score: 9.95.
  
  
 0.800
KXA15144.1
Holliday junction DNA helicase RuvA; KEGG: gvg:HMPREF0421_20857 2.1e-80 ruvA; crossover junction ATP-dependent DNA helicase RuvA K03550; Psort location: Cytoplasmic, score: 9.67.
  
  
 0.770
KXA15297.1
KEGG: gvh:HMPREF9231_0770 0. uvrA; excinuclease ABC subunit A K03701; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.753
UvrB
Excinuclease ABC, B subunit; KEGG: gvg:HMPREF0421_20977 0. uvrB; excision endonuclease subunit UvrB K03702; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.751
KXA15158.1
FtsK/SpoIIIE family protein; KEGG: eab:ECABU_c09310 2.0e-100 ftsK; cell division protein FtsK K03466; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.728
KXA16979.1
DNA polymerase III, alpha subunit; KEGG: gvg:HMPREF0421_20519 0. dnaE; DNA-directed DNA polymerase III subunit alpha K02337; Psort location: Cytoplasmic, score: 9.97.
    
 0.725
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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