STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17036.1KEGG: apb:SAR116_2228 1.5e-13 transcription elongation factor K03624; Psort location: Cytoplasmic, score: 9.97. (159 aa)    
Predicted Functional Partners:
RpoC
KEGG: gvg:HMPREF0421_21208 0. rpoC; DNA-directed RNA polymerase subunit beta prime K03046; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.978
RpoB
KEGG: gvg:HMPREF0421_21209 0. rpoB; DNA-directed RNA polymerase subunit beta K03043; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.961
RpoA
KEGG: gvh:HMPREF9231_0263 6.9e-169 rpoA; DNA-directed RNA polymerase subunit alpha K03040; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.955
rpoZ
KEGG: gvg:HMPREF0421_20761 2.2e-46 rpoZ; DNA-directed RNA polymerase subunit omega K03060.
   
 
 0.953
KXA17037.1
Putative FK506-binding protein; KEGG: gvg:HMPREF0421_20457 1.6e-66 fkbP; peptidyl-prolyl cis-trans isomerase.
  
  
 0.879
KXA17038.1
L-serine ammonia-lyase; KEGG: gvh:HMPREF9231_1100 7.7e-225 putative L-serine ammonia-lyase; K01752 L-serine dehydratase; Psort location: Cytoplasmic, score: 7.50.
     
 0.790
KXA16341.1
Transcription termination/antitermination factor NusG; KEGG: apb:SAR116_2379 3.4e-25 transcription antiterminator K02601; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.780
KXA15299.1
KEGG: gvh:HMPREF9231_0768 3.4e-192 IMP dehydrogenase family protein; K00088 IMP dehydrogenase; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.758
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.754
KXA15246.1
Transcription antitermination factor NusB; KEGG: mas:Mahau_0986 2.3e-10 sun protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.742
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.