STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17038.1L-serine ammonia-lyase; KEGG: gvh:HMPREF9231_1100 7.7e-225 putative L-serine ammonia-lyase; K01752 L-serine dehydratase; Psort location: Cytoplasmic, score: 7.50. (476 aa)    
Predicted Functional Partners:
KXA17037.1
Putative FK506-binding protein; KEGG: gvg:HMPREF0421_20457 1.6e-66 fkbP; peptidyl-prolyl cis-trans isomerase.
       0.812
KXA17036.1
KEGG: apb:SAR116_2228 1.5e-13 transcription elongation factor K03624; Psort location: Cytoplasmic, score: 9.97.
     
 0.790
KXA16671.1
3-dehydroquinate synthase; KEGG: gvg:HMPREF0421_21086 6.5e-276 aroB; 3-dehydroquinate synthase K13829; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.703
KXA15443.1
KEGG: gvg:HMPREF0421_20721 4.7e-250 exopolyphosphatase family protein; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase; Psort location: Cytoplasmic, score: 9.97.
     
 0.701
KXA15442.1
Putative cell division protein FtsL; KEGG: mru:mru_1319 0.0022 DEAD/DEAH box helicase domain-containing protein; K03725 archaea-specific helicase.
       0.692
Eno
Phosphopyruvate hydratase; KEGG: gvg:HMPREF0421_20718 5.9e-227 eno; enolase K01689; Psort location: Cytoplasmic, score: 9.97.
     
 0.658
AspS
aspartate--tRNA ligase; KEGG: gvg:HMPREF0421_20832 0. aspS; aspartate--tRNA ligase K01876; Psort location: Cytoplasmic, score: 10.00.
       0.639
KXA15133.1
Putative replication-associated recombination protein A; KEGG: bde:BDP_0795 5.3e-194 ATPase AAA K07478.
       0.636
KXA17529.1
alanine--tRNA ligase; KEGG: gvh:HMPREF9231_0443 0. alaS; alanine--tRNA ligase K01872; Psort location: Cytoplasmic, score: 9.97.
       0.612
KXA17039.1
e1-E2 ATPase; KEGG: gva:HMPREF0424_0568 0. E1-E2 ATPase; K01552; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.585
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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