STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NrdDKEGG: gvh:HMPREF9231_1131 0. nrdD; anaerobic ribonucleoside-triphosphate reductase K00527; Psort location: Cytoplasmic, score: 7.50. (815 aa)    
Predicted Functional Partners:
KXA17045.1
KEGG: gvh:HMPREF9231_1130 9.6e-124 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068; Psort location: Cytoplasmic, score: 9.97.
 
 0.993
PyrG
CTP synthase; KEGG: gvg:HMPREF0421_21084 2.9e-296 pyrG; CTP synthase K01937; Psort location: Cytoplasmic, score: 7.50.
    
 0.911
Pyk
Pyruvate kinase; KEGG: gvg:HMPREF0421_20976 5.7e-261 pyk; pyruvate kinase K00873; Psort location: Cytoplasmic, score: 7.50.
    
  0.902
PflA
KEGG: gvh:HMPREF9231_0918 3.0e-159 pflA; pyruvate formate-lyase activating enzyme K04069; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.739
KXA16210.1
methionine--tRNA ligase; KEGG: gvg:HMPREF0421_20283 0. metG; methionine--tRNA ligase K01874; Psort location: Cytoplasmic, score: 9.97.
     
 0.723
KXA17013.1
KEGG: gvg:HMPREF0421_20484 3.7e-44 xseB; exodeoxyribonuclease VII small subunit K03602.
       0.692
KXA17014.1
KEGG: gvh:HMPREF9231_1073 2.5e-210 xseA; exodeoxyribonuclease VII large subunit K03601; Psort location: Cytoplasmic, score: 9.97.
       0.692
KXA16060.1
KEGG: gva:HMPREF0424_0176 3.7e-193 ribonucleoside-diphosphate reductase, beta subunit K00526; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.642
KXA17253.1
Oligoribonuclease; KEGG: gvh:HMPREF9231_0631 8.6e-123 orn; oligoribonuclease K13288; Psort location: Cytoplasmic, score: 7.50.
       0.599
KXA15305.1
KEGG: ccm:Ccan_01720 2.5e-45 protein mrp-like protein K03593.
       0.579
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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