STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16808.1Carbamoyl-phosphate synthase L chain, ATP binding domain protein; KEGG: gvg:HMPREF0421_21230 0. bccA; biotin carboxylase K11263; Psort location: Cytoplasmic, score: 7.50. (615 aa)    
Predicted Functional Partners:
KXA16809.1
Carboxyl transferase domain protein; KEGG: gvg:HMPREF0421_21229 1.2e-281 pccB; propionyl-CoA carboxylase; Psort location: Cytoplasmic, score: 7.50.
 
 0.999
KXA16340.1
Putative biotin--[acetyl-CoA-carboxylase] ligase; KEGG: gvh:HMPREF9231_1192 1.3e-66 hypothetical protein; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase; Psort location: CytoplasmicMembrane, score: 8.16.
 
  
 0.999
rpoZ
KEGG: gvg:HMPREF0421_20761 2.2e-46 rpoZ; DNA-directed RNA polymerase subunit omega K03060.
   
  0.982
RpoA
KEGG: gvh:HMPREF9231_0263 6.9e-169 rpoA; DNA-directed RNA polymerase subunit alpha K03040; Psort location: Cytoplasmic, score: 9.97.
   
 0.967
RpoB
KEGG: gvg:HMPREF0421_21209 0. rpoB; DNA-directed RNA polymerase subunit beta K03043; Psort location: Cytoplasmic, score: 9.97.
   
 0.966
GatA
KEGG: gvg:HMPREF0421_20064 1.2e-269 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433; Psort location: Cytoplasmic, score: 9.97.
    
 0.944
KXA16810.1
MaoC-like protein; KEGG: gvg:HMPREF0421_21228 0. fas; type I multifunctional fatty acid synthase; K11533 fatty acid synthase, bacteria type.
 
  
 0.935
KXA16807.1
BioY family protein; KEGG: apb:SAR116_1163 3.8e-17 biotin biosynthesis protein BioY K03523; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.889
KXA16811.1
KEGG: gvh:HMPREF9231_0309 1.4e-51 4'-phosphopantetheinyl transferase; K00997 holo-[acyl-carrier protein] synthase; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.791
KXA15536.1
NAD+ synthase; KEGG: gvg:HMPREF0421_20632 3.3e-297 nadE; NH(3)-dependent NAD+ synthetase K01950; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.751
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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