STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16836.1Hypothetical protein. (258 aa)    
Predicted Functional Partners:
KXA16835.1
KEGG: gvh:HMPREF9231_0328 1.3e-117 TrmH family RNA methyltransferase; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase.
       0.751
RpoB
KEGG: gvg:HMPREF0421_21209 0. rpoB; DNA-directed RNA polymerase subunit beta K03043; Psort location: Cytoplasmic, score: 9.97.
     
 0.708
KXA17057.1
KEGG: gvh:HMPREF9231_0973 3.1e-276 GMP synthase; K01951 GMP synthase (glutamine-hydrolysing); Psort location: Cytoplasmic, score: 7.50.
       0.658
KXA15899.1
Carbonate dehydratase; KEGG: gvh:HMPREF9231_0030 6.3e-104 cah; carbonate dehydratase K01673; Psort location: Cytoplasmic, score: 9.97.
       0.639
KXA16833.1
Putative membrane protein; KEGG: bqy:MUS_4455 6.2e-33 ydeD; phosphate acetyltransferase (phosphotransacetylase); Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.606
KXA16837.1
Hypothetical protein.
       0.584
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
       0.564
KXA15919.1
PAP2 family protein; KEGG: sgg:SGGBAA2069_c17470 5.8e-14 PAP2 superfamily protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.559
RpoC
KEGG: gvg:HMPREF0421_21208 0. rpoC; DNA-directed RNA polymerase subunit beta prime K03046; Psort location: Cytoplasmic, score: 9.97.
       0.538
KXA16834.1
Hypothetical protein.
       0.441
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.