STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16861.1KEGG: gvg:HMPREF0421_21167 3.9e-127 thiamine diphosphokinase K00949. (247 aa)    
Predicted Functional Partners:
Gap
KEGG: gvg:HMPREF0421_21168 2.0e-185 gap; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) K00134; Psort location: Cytoplasmic, score: 9.97.
     
 0.824
KXA16252.1
Phosphomethylpyrimidine kinase; KEGG: gvg:HMPREF0421_20209 1.7e-298 theD; phosphomethylpyrimidine kinase K00941; Psort location: Cytoplasmic, score: 7.50.
     
 0.753
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.712
KXA15912.1
Kinase domain protein; KEGG: gvh:HMPREF9231_0017 0. putative serine/threonine-protein kinase PrkC; K08884 serine/threonine protein kinase, bacterial; Psort location: CytoplasmicMembrane, score: 9.51.
  
  
 0.693
KXA16859.1
YbaK/EbsC protein; KEGG: ent:Ent638_0960 4.1e-29 hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.620
KXA16402.1
Phage integrase, SAM-like domain protein; KEGG: pfe:PSF113_1062 5.2e-45 xerD; XerD protein K04763; Psort location: Cytoplasmic, score: 9.97.
       0.550
KXA16388.1
Hypothetical protein; KEGG: ase:ACPL_342 7.2e-06 Pierisin; Psort location: Cytoplasmic, score: 7.50.
 
     0.542
RpmB
Ribosomal protein L28; KEGG: apb:SAR116_1905 0.00042 50S ribosomal protein L28 K02902; Psort location: Cytoplasmic, score: 9.97.
   
   0.531
KXA16862.1
KEGG: rha:RHA1_ro00963 1.7e-39 infC; translation initiation factor IF-3 K02520; Psort location: Cytoplasmic, score: 9.97.
     
 0.530
KXA17145.1
Hypothetical protein.
     
 0.497
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.