STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16695.1KEGG: gvg:HMPREF0421_20440 6.4e-150 tRNA(Ile)-lysidine synthase K04075; Psort location: Cytoplasmic, score: 7.50. (362 aa)    
Predicted Functional Partners:
KXA16696.1
KEGG: gvg:HMPREF0421_20441 7.2e-87 hpt; hypoxanthine phosphoribosyltransferase K00760; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.992
KXA16697.1
KEGG: gvh:HMPREF9231_1113 0. hflB; ATP-dependent metallopeptidase HflB K03798; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
 0.867
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.835
KXA16694.1
KEGG: gvg:HMPREF0421_20438 2.1e-215 D-Ala-D-Ala carboxypeptidase 3 (S13) domain-containing protein; K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4); Psort location: Extracellular, score: 9.72.
     
 0.802
KXA16960.1
lysine--tRNA ligase; KEGG: gvh:HMPREF9231_1018 1.3e-291 lysS; lysine--tRNA ligase K04567; Psort location: Cytoplasmic, score: 10.00.
   
 
 0.795
KXA16698.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.788
KXA16814.1
Putative dTDP-4-dehydrorhamnose reductase; KEGG: gvg:HMPREF0421_20400 3.7e-257 rmlCD; bifunctional dTDP-4-keto-L-rhamnose reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase; K00067 dTDP-4-dehydrorhamnose reductase K01790; Psort location: Cytoplasmic, score: 7.50.
  
   0.768
IleS
isoleucine--tRNA ligase; KEGG: gvh:HMPREF9231_1070 0. ileS; isoleucine--tRNA ligase K01870; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.757
KXA16693.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.727
KXA15901.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.727
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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