STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16640.1TRAM domain protein; KEGG: gva:HMPREF0424_0493 3.5e-229 TRAM domain protein; K00599; Psort location: Cytoplasmic, score: 7.50. (468 aa)    
Predicted Functional Partners:
KXA16641.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.925
KXA16642.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.872
KXA16643.1
KEGG: gvg:HMPREF0421_21079 2.1e-144 xthA; exodeoxyribonuclease III K01142; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.835
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.776
KXA16671.1
3-dehydroquinate synthase; KEGG: gvg:HMPREF0421_21086 6.5e-276 aroB; 3-dehydroquinate synthase K13829; Psort location: Cytoplasmic, score: 9.97.
  
    0.728
KXA17039.1
e1-E2 ATPase; KEGG: gva:HMPREF0424_0568 0. E1-E2 ATPase; K01552; Psort location: CytoplasmicMembrane, score: 10.00.
       0.692
KXA17040.1
Hypothetical protein.
       0.692
KXA15536.1
NAD+ synthase; KEGG: gvg:HMPREF0421_20632 3.3e-297 nadE; NH(3)-dependent NAD+ synthetase K01950; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.673
KXA16297.1
KEGG: bde:BDP_1927 1.7e-149 Maf-like protein K06287; Psort location: Cytoplasmic, score: 7.50.
     
 0.660
KXA16181.1
Putative calcium-translocating P-type ATPase, PMCA-type; KEGG: gvg:HMPREF0421_20193 0. atp2C1; putative calcium-transporting ATPase; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.649
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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