STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16643.1KEGG: gvg:HMPREF0421_21079 2.1e-144 xthA; exodeoxyribonuclease III K01142; Psort location: Cytoplasmic, score: 9.97. (297 aa)    
Predicted Functional Partners:
KXA17072.1
KEGG: gvh:HMPREF9231_0991 0. polA; DNA-directed DNA polymerase K02335; Psort location: Cytoplasmic, score: 7.50.
  
 0.999
KXA15926.1
DNA polymerase III, beta subunit; KEGG: gvh:HMPREF9231_0002 9.1e-183 dnaN; DNA polymerase III subunit beta K02338; Psort location: Cytoplasmic, score: 9.67.
  
 0.999
KXA16072.1
Endonuclease III; KEGG: gvh:HMPREF9231_0200 2.3e-90 nth; endonuclease III K10773.
 
 0.999
KXA15177.1
uracil-DNA glycosylase; KEGG: gvg:HMPREF0421_20654 6.4e-111 ung; uracil-DNA glycosylase K03648; Psort location: Cytoplasmic, score: 9.67.
  
 0.979
KXA16178.1
Cytidine and deoxycytidylate deaminase zinc-binding region; KEGG: gvg:HMPREF0421_20196 2.4e-70 fca1; putative cytosine deaminase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.907
KXA15883.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
   
 
 0.876
KXA16642.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.846
KXA16641.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.837
KXA16640.1
TRAM domain protein; KEGG: gva:HMPREF0424_0493 3.5e-229 TRAM domain protein; K00599; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.835
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.816
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.