STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16662.1Transcription factor WhiB. (90 aa)    
Predicted Functional Partners:
KXA16661.1
FtsK/SpoIIIE family protein; KEGG: ppo:PPM_p0073 2.8e-13 topB; DNA topoisomerase III; Psort location: CytoplasmicMembrane, score: 9.99.
    
 0.932
RpoD
RNA polymerase sigma factor RpoD; KEGG: lru:HMPREF0538_21998 4.6e-92 rpoD; DNA-directed RNA polymerase sigma subunit RpoD K03086; Psort location: Cytoplasmic, score: 9.97.
    
 
 0.930
KXA15323.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.782
KXA16386.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.773
SecG
Preprotein translocase, SecG subunit; Psort location: CytoplasmicMembrane, score: 9.55.
  
     0.773
KXA15994.1
Hypothetical protein.
  
     0.772
KXA16660.1
Cell envelope-like function transcriptional attenuator common domain protein; Psort location: CytoplasmicMembrane, score: 9.99.
     
 0.757
rpoZ
KEGG: gvg:HMPREF0421_20761 2.2e-46 rpoZ; DNA-directed RNA polymerase subunit omega K03060.
  
     0.754
KXA16659.1
Cell envelope-like function transcriptional attenuator common domain protein; Psort location: CytoplasmicMembrane, score: 9.51.
     
 0.729
KXA16998.1
Putative hydrolase; KEGG: pfd:PFDG_00583 1.3e-13 hypothetical protein similar to methionine aminopeptidase; K01265 methionyl aminopeptidase; Psort location: Cellwall, score: 8.97.
  
     0.722
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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