STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16670.13-dehydroquinate dehydratase, type II; KEGG: gvh:HMPREF9231_0451 1.1e-72 aroQ; 3-dehydroquinate dehydratase K03786. (183 aa)    
Predicted Functional Partners:
KXA16671.1
3-dehydroquinate synthase; KEGG: gvg:HMPREF0421_21086 6.5e-276 aroB; 3-dehydroquinate synthase K13829; Psort location: Cytoplasmic, score: 9.97.
 
 0.994
KXA16672.1
Chorismate synthase; KEGG: gvh:HMPREF9231_0449 1.0e-197 aroC; chorismate synthase K01736; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.954
KXA15255.1
Shikimate dehydrogenase substrate binding domain protein; KEGG: gvg:HMPREF0421_20764 1.3e-183 aroE; shikimate dehydrogenase K00014; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.882
PyrG
CTP synthase; KEGG: gvg:HMPREF0421_21084 2.9e-296 pyrG; CTP synthase K01937; Psort location: Cytoplasmic, score: 7.50.
     
 0.852
KXA16673.1
Hypothetical protein; KEGG: gvh:HMPREF9231_0447 1.3e-71 peptidase, A24 type IV prepilin peptidase family protein; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.821
KXA16396.1
FeS assembly protein SufD; KEGG: apb:SAR116_0016 2.3e-18 Fe-S center production/stability protein SufD K09015; Psort location: Cytoplasmic, score: 7.50.
     
 0.703
KXA16966.1
KEGG: gvh:HMPREF9231_1026 1.0e-220 cysteine desulfurase, SufS family; K11717 cysteine desulfurase / selenocysteine lyase; Psort location: Cytoplasmic, score: 9.67.
  
    0.702
SufB
KEGG: suc:ECTR2_773 5.8e-156 sufB; feS assembly protein SufB K09014; Psort location: Cytoplasmic, score: 7.50.
     
 0.699
SufC
KEGG: bde:BDP_1033 1.0e-119 sufC; FeS assembly ATPase SufC K09013; Psort location: Cytoplasmic, score: 9.97.
       0.692
Efp
KEGG: sen:SACE_2075 2.2e-62 efp; elongation factor P K02356; Psort location: Cytoplasmic, score: 9.97.
  
    0.681
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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