STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16452.1KEGG: gvh:HMPREF9231_0384 2.5e-132 mvaD; diphosphomevalonate decarboxylase K01597. (384 aa)    
Predicted Functional Partners:
KXA16451.1
Mevalonate kinase; KEGG: gvg:HMPREF0421_21153 1.7e-119 mvk; putative mevalonate kinase K00869; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.986
KXA16453.1
KEGG: gvg:HMPREF0421_21151 0. fni; putative isopentenyl-diphosphate delta-isomerase K01823; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.977
KXA16366.1
KEGG: gvh:HMPREF9231_0430 6.1e-193 hydroxymethylglutaryl-CoA synthase K01641; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.965
KXA16368.1
KEGG: gvh:HMPREF9231_0431 1.6e-208 hydroxymethylglutaryl-CoA reductase, degradative K00054; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.863
KXA16960.1
lysine--tRNA ligase; KEGG: gvh:HMPREF9231_1018 1.3e-291 lysS; lysine--tRNA ligase K04567; Psort location: Cytoplasmic, score: 10.00.
      0.660
KXA17057.1
KEGG: gvh:HMPREF9231_0973 3.1e-276 GMP synthase; K01951 GMP synthase (glutamine-hydrolysing); Psort location: Cytoplasmic, score: 7.50.
       0.658
KXA17591.1
Polyprenyl synthetase; KEGG: gvh:HMPREF9231_0947 7.4e-149 polyprenyl synthetase; K13787 geranylgeranyl diphosphate synthase, type I; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.589
KXA16370.1
KEGG: gvg:HMPREF0421_21107 5.1e-196 atoB; acetyl-CoA acetyltransferase K00626; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.579
GuaB
KEGG: gvh:HMPREF9231_0628 3.5e-268 guaB; inosine-5'-monophosphate dehydrogenase K00088; Psort location: Cytoplasmic, score: 7.50.
     
 0.507
RpmB
Ribosomal protein L28; KEGG: apb:SAR116_1905 0.00042 50S ribosomal protein L28 K02902; Psort location: Cytoplasmic, score: 9.97.
       0.481
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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