STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16427.1KEGG: gvh:HMPREF9231_0392 1.1e-90 RsmD family RNA methyltransferase; K08316 16S rRNA (guanine966-N2)-methyltransferase. (193 aa)    
Predicted Functional Partners:
KXA16387.1
KEGG: gvh:HMPREF9231_0402 9.5e-85 coaD; pantetheine-phosphate adenylyltransferase K00954; Psort location: Cytoplasmic, score: 9.67.
 
  
 0.903
KXA15952.1
Signal recognition particle-docking protein FtsY; KEGG: apb:SAR116_1814 2.5e-54 cell division protein ftsY K03110; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
 0.759
KXA15135.1
Ribosome biogenesis GTPase Der; KEGG: bbp:BBPR_1002 5.1e-292 GTP-binding protein K03977; Psort location: Cytoplasmic, score: 9.95.
 
  
 0.743
RpmB
Ribosomal protein L28; KEGG: apb:SAR116_1905 0.00042 50S ribosomal protein L28 K02902; Psort location: Cytoplasmic, score: 9.97.
     
 0.703
KXA15177.1
uracil-DNA glycosylase; KEGG: gvg:HMPREF0421_20654 6.4e-111 ung; uracil-DNA glycosylase K03648; Psort location: Cytoplasmic, score: 9.67.
     
 0.694
KXA16423.1
KEGG: gvg:HMPREF0421_21149 0. recG; DNA helicase RecG K03655; Psort location: Cytoplasmic, score: 9.97.
       0.692
KXA16392.1
Ribonuclease III; KEGG: gvg:HMPREF0421_21131 1.2e-146 rnc; ribonuclease III K03685; Psort location: Cytoplasmic, score: 9.97.
  
    0.681
KXA15946.1
KEGG: bbp:BBPR_1827 4.0e-77 protein-disulfide isomerase.
     
 0.640
KXA16389.1
Putative ACR; Psort location: Cytoplasmic, score: 7.50.
       0.639
KXA16390.1
Ribosomal protein L32; Psort location: Extracellular, score: 8.91.
       0.639
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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