STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16378.1KEGG: apb:SAR116_1818 3.8e-07 16S rRNA processing protein K02860; Psort location: Cytoplasmic, score: 7.50. (198 aa)    
Predicted Functional Partners:
KXA16380.1
Ribosomal protein S16; KEGG: apb:SAR116_1817 1.1e-19 30S ribosomal protein S16 K02959; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.981
KXA16377.1
KEGG: gvh:HMPREF9231_0393 1.2e-132 trmD; tRNA (guanine-N(1)-)-methyltransferase; K00554 tRNA (guanine37-N1)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.978
KXA16379.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.956
KXA15688.1
Ribosomal protein S19; KEGG: apb:SAR116_2395 1.0e-25 30S ribosomal protein S19 K02965; Psort location: Cytoplasmic, score: 9.67.
  
 
 0.928
RplS
Ribosomal protein L19; KEGG: scp:HMPREF0833_10394 3.2e-29 argB; acetylglutamate kinase K02884; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.897
KXA15135.1
Ribosome biogenesis GTPase Der; KEGG: bbp:BBPR_1002 5.1e-292 GTP-binding protein K03977; Psort location: Cytoplasmic, score: 9.95.
  
  
 0.822
KXA17057.1
KEGG: gvh:HMPREF9231_0973 3.1e-276 GMP synthase; K01951 GMP synthase (glutamine-hydrolysing); Psort location: Cytoplasmic, score: 7.50.
  
  
 0.818
KXA16382.1
KEGG: shn:Shewana3_3018 3.2e-100 signal recognition particle protein K03106; Psort location: CytoplasmicMembrane, score: 9.51.
  
  
 0.802
KXA15680.1
Ribosomal protein L13; KEGG: apb:SAR116_0493 9.2e-32 50S ribosomal protein L13 K02871; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.794
KXA16381.1
Endonuclease/exonuclease/phosphatase family protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.793
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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