STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16379.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (77 aa)    
Predicted Functional Partners:
KXA16380.1
Ribosomal protein S16; KEGG: apb:SAR116_1817 1.1e-19 30S ribosomal protein S16 K02959; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.981
KXA15933.1
r3H domain protein; KEGG: sgg:SGGBAA2069_c20720 1.8e-12 jag; Jag family RNA-binding protein K06346; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.957
KXA16378.1
KEGG: apb:SAR116_1818 3.8e-07 16S rRNA processing protein K02860; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.956
KXA16377.1
KEGG: gvh:HMPREF9231_0393 1.2e-132 trmD; tRNA (guanine-N(1)-)-methyltransferase; K00554 tRNA (guanine37-N1)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.895
RplS
Ribosomal protein L19; KEGG: scp:HMPREF0833_10394 3.2e-29 argB; acetylglutamate kinase K02884; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.836
KXA16381.1
Endonuclease/exonuclease/phosphatase family protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.802
KXA16382.1
KEGG: shn:Shewana3_3018 3.2e-100 signal recognition particle protein K03106; Psort location: CytoplasmicMembrane, score: 9.51.
  
  
 0.791
KXA16311.1
KEGG: gvg:HMPREF0421_20320 0. cafA; Rne/Rng family ribonuclease; K08300 ribonuclease E; Psort location: Cytoplasmic, score: 9.95.
    
 
 0.719
KXA17067.1
TIGR00252 family protein; KEGG: gvg:HMPREF0421_20567 6.3e-56 endonuclease K07460; Psort location: Cytoplasmic, score: 7.50.
       0.639
KXA17068.1
Mg chelatase-like protein; KEGG: bde:BDP_0806 5.2e-171 ATPase-like magnesium chelatase subunit ChlI K07391.
       0.639
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.