STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TypAKEGG: bbp:BBPR_0603 0. typA; GTP-binding protein TypA K06207; Psort location: CytoplasmicMembrane, score: 8.78. (641 aa)    
Predicted Functional Partners:
KXA16399.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.871
KXA17057.1
KEGG: gvh:HMPREF9231_0973 3.1e-276 GMP synthase; K01951 GMP synthase (glutamine-hydrolysing); Psort location: Cytoplasmic, score: 7.50.
  
  
 0.839
KXA16862.1
KEGG: rha:RHA1_ro00963 1.7e-39 infC; translation initiation factor IF-3 K02520; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.830
KXA16400.1
Prephenate dehydratase; KEGG: gvh:HMPREF9231_0415 6.7e-171 prephenate dehydratase K14170; Psort location: Cytoplasmic, score: 9.97.
     
 0.817
KXA16401.1
Prephenate dehydrogenase; KEGG: gvg:HMPREF0421_21121 7.3e-165 tyrA; prephenate dehydrogenase K04517; Psort location: Cytoplasmic, score: 7.50.
       0.810
KXA16403.1
Putative sporulation initiation inhibitor protein Soj; KEGG: sen:SACE_5241 1.4e-81 chromosome partitioning protein K03496; Psort location: CytoplasmicMembrane, score: 8.78.
     
 0.774
RpmI
Ribosomal protein L35.
  
    0.756
RplT
Ribosomal protein L20; KEGG: apb:SAR116_1231 1.7e-23 50S ribosomal protein L20 K02887; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.707
KXA17048.1
DEAD/DEAH box helicase; KEGG: gvg:HMPREF0421_20422 3.3e-256 ppx; exopolyphosphatase; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.697
KXA17457.1
ABC transporter, substrate-binding protein, family 5; KEGG: dhd:Dhaf_0453 6.1e-18 4-phytase K02035; Psort location: Cellwall, score: 9.21.
  
    0.681
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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