STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16350.1Hypothetical protein; KEGG: gvh:HMPREF9231_0434 4.4e-47 putative ATP-dependent DNA helicase PcrA; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA. (111 aa)    
Predicted Functional Partners:
KXA16373.1
KEGG: gvg:HMPREF0421_21103 0. pcrA; ATP-dependent DNA helicase PcrA K03657; Psort location: Cytoplasmic, score: 9.67.
      0.950
KXA15154.1
RecA protein; KEGG: jde:Jden_1041 1.7e-135 recA protein K03553; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.822
UvrB
Excinuclease ABC, B subunit; KEGG: gvg:HMPREF0421_20977 0. uvrB; excision endonuclease subunit UvrB K03702; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.813
KXA15926.1
DNA polymerase III, beta subunit; KEGG: gvh:HMPREF9231_0002 9.1e-183 dnaN; DNA polymerase III subunit beta K02338; Psort location: Cytoplasmic, score: 9.67.
 
 0.771
KXA15153.1
Regulatory protein RecX; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.713
KXA15297.1
KEGG: gvh:HMPREF9231_0770 0. uvrA; excinuclease ABC subunit A K03701; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.711
KXA16199.1
DNA topoisomerase I; KEGG: gvh:HMPREF9231_1284 0. topA; DNA topoisomerase I K03168; Psort location: Cytoplasmic, score: 9.67.
  
 
 0.709
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.684
KXA16372.1
KEGG: gvg:HMPREF0421_21105 7.9e-97 xpt; xanthine phosphoribosyltransferase K03816; Psort location: Cytoplasmic, score: 7.50.
  
    0.648
KXA17252.1
Hypothetical protein; KEGG: bde:BDP_0628 9.8e-170 helicase.
  
 
 0.615
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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