STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16343.1Putative aspartate transaminase; KEGG: gvg:HMPREF0421_20325 1.8e-216 aspC2; aspartate transaminase; Psort location: Cytoplasmic, score: 7.50. (427 aa)    
Predicted Functional Partners:
KXA16342.1
Hypothetical protein; Psort location: Extracellular, score: 8.91.
       0.773
KXA16307.1
Glutamate 5-kinase; KEGG: gvh:HMPREF9231_1231 2.1e-176 proB; glutamate 5-kinase K00931; Psort location: Cytoplasmic, score: 9.95.
  
  
 0.738
KXA16308.1
Obg family GTPase CgtA; KEGG: bya:BANAU_2707 2.5e-84 obgE; tRNA modification GTPase mnmE K03979; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.716
KXA15841.1
Ribosomal protein L11; KEGG: pmj:P9211_02221 4.2e-43 rplK; 50S ribosomal protein L11 K02867; Psort location: Cytoplasmic, score: 9.97.
  
    0.701
KXA16341.1
Transcription termination/antitermination factor NusG; KEGG: apb:SAR116_2379 3.4e-25 transcription antiterminator K02601; Psort location: Cytoplasmic, score: 7.50.
     
 0.694
KXA15536.1
NAD+ synthase; KEGG: gvg:HMPREF0421_20632 3.3e-297 nadE; NH(3)-dependent NAD+ synthetase K01950; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.694
KXA15974.1
Amino acid kinase family protein; KEGG: gvg:HMPREF0421_20042 2.7e-126 lysC; aspartate kinase 2 K00928; Psort location: Cytoplasmic, score: 7.50.
  
 0.690
KXA16671.1
3-dehydroquinate synthase; KEGG: gvg:HMPREF0421_21086 6.5e-276 aroB; 3-dehydroquinate synthase K13829; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.684
RplA
Ribosomal protein L1; KEGG: apb:SAR116_2381 2.9e-58 50S ribosomal protein L1 K02863; Psort location: Cytoplasmic, score: 9.97.
       0.684
KXA16310.1
Ribosomal protein L21; KEGG: apb:SAR116_1856 4.6e-14 50S ribosomal protein L21 K02888.
    
  0.674
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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