STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16312.1KEGG: apb:SAR116_2450 6.0e-12 auxin efflux carrier K07088; Psort location: CytoplasmicMembrane, score: 10.00. (313 aa)    
Predicted Functional Partners:
KXA17074.1
KEGG: gvh:HMPREF9231_0993 8.1e-143 putative 1,4-dihydroxy-2-naphthoate octaprenyltransferase; K02548 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.639
KXA17057.1
KEGG: gvh:HMPREF9231_0973 3.1e-276 GMP synthase; K01951 GMP synthase (glutamine-hydrolysing); Psort location: Cytoplasmic, score: 7.50.
       0.638
RpsR
Ribosomal protein S18; Psort location: Cytoplasmic, score: 9.67.
       0.626
KXA15901.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.624
KXA15135.1
Ribosome biogenesis GTPase Der; KEGG: bbp:BBPR_1002 5.1e-292 GTP-binding protein K03977; Psort location: Cytoplasmic, score: 9.95.
       0.595
KXA16693.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.565
KXA16311.1
KEGG: gvg:HMPREF0421_20320 0. cafA; Rne/Rng family ribonuclease; K08300 ribonuclease E; Psort location: Cytoplasmic, score: 9.95.
  
    0.509
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
  
    0.506
KXA15214.1
ABC transporter, substrate-binding protein, family 5; KEGG: smd:Smed_3647 7.5e-37 4-phytase K02035; Psort location: Cellwall, score: 9.20.
 
     0.499
KXA16199.1
DNA topoisomerase I; KEGG: gvh:HMPREF9231_1284 0. topA; DNA topoisomerase I K03168; Psort location: Cytoplasmic, score: 9.67.
       0.483
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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