STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16248.1Hypothetical protein; KEGG: dre:553347 2.6e-14 polr2a, im:7136071; polymerase (RNA) II (DNA directed) polypeptide A; K03006 DNA-directed RNA polymerase II subunit RPB1; Psort location: Cellwall, score: 9.20. (573 aa)    
Predicted Functional Partners:
KXA16199.1
DNA topoisomerase I; KEGG: gvh:HMPREF9231_1284 0. topA; DNA topoisomerase I K03168; Psort location: Cytoplasmic, score: 9.67.
  
 
 0.680
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.677
KXA17072.1
KEGG: gvh:HMPREF9231_0991 0. polA; DNA-directed DNA polymerase K02335; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.648
KXA15878.1
KEGG: gvg:HMPREF0421_20178 0. ABC transporter ATP-binding protein K02031:K02034; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.610
KXA15135.1
Ribosome biogenesis GTPase Der; KEGG: bbp:BBPR_1002 5.1e-292 GTP-binding protein K03977; Psort location: Cytoplasmic, score: 9.95.
  
  
 0.597
KXA16247.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.572
KXA16297.1
KEGG: bde:BDP_1927 1.7e-149 Maf-like protein K06287; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.568
KXA15532.1
KEGG: gvg:HMPREF0421_20626 4.0e-93 cypB; peptidyl-prolyl cis-trans isomerase K03767; Psort location: Cytoplasmic, score: 9.97.
  
 0.559
KXA17048.1
DEAD/DEAH box helicase; KEGG: gvg:HMPREF0421_20422 3.3e-256 ppx; exopolyphosphatase; Psort location: Cytoplasmic, score: 9.97.
  
 0.558
KXA15936.1
ParB-like protein; KEGG: pub:SAR11_0354 2.1e-42 parB; chromosome partitioning protein K03497; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.555
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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