STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16201.1KEGG: gvh:HMPREF9231_1282 1.2e-185 putative DNA polymerase III, delta' subunit; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97. (396 aa)    
Predicted Functional Partners:
KXA15926.1
DNA polymerase III, beta subunit; KEGG: gvh:HMPREF9231_0002 9.1e-183 dnaN; DNA polymerase III subunit beta K02338; Psort location: Cytoplasmic, score: 9.67.
 
 
 0.999
KXA15976.1
KEGG: gvh:HMPREF9231_1326 2.1e-277 dnaX; DNA polymerase III, subunit gamma and tau K02343; Psort location: Cytoplasmic, score: 9.97.
  
  
 
0.999
KXA15366.1
KEGG: gvh:HMPREF9231_0826 1.1e-152 putative DNA polymerase III, delta subunit; K02340 DNA polymerase III subunit delta; Psort location: Cellwall, score: 8.19.
 
 
 0.999
KXA16200.1
dTMP kinase; KEGG: gvh:HMPREF9231_1283 1.8e-106 tmk; dTMP kinase K00943; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.975
KXA16979.1
DNA polymerase III, alpha subunit; KEGG: gvg:HMPREF0421_20519 0. dnaE; DNA-directed DNA polymerase III subunit alpha K02337; Psort location: Cytoplasmic, score: 9.97.
 
 0.945
KXA16199.1
DNA topoisomerase I; KEGG: gvh:HMPREF9231_1284 0. topA; DNA topoisomerase I K03168; Psort location: Cytoplasmic, score: 9.67.
 
   
 0.922
KXA16857.1
Exonuclease; KEGG: gvh:HMPREF9231_0355 5.3e-107 exonuclease; K02342 DNA polymerase III subunit epsilon.
 
 0.859
KXA17250.1
Single-strand binding family protein.
 
 
 0.833
KXA16446.1
KEGG: shn:Shewana3_3590 1.5e-10 single-strand binding protein K03111.
   
 0.796
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.780
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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