STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16203.1Dipeptidase; KEGG: gvh:HMPREF9231_1280 5.3e-281 pepD; dipeptidase K08659; Psort location: Cytoplasmic, score: 7.50. (535 aa)    
Predicted Functional Partners:
KXA16202.1
Raf-like protein.
    
  0.828
KXA16204.1
Formate--tetrahydrofolate ligase; KEGG: gvg:HMPREF0421_20275 3.0e-262 fhs; formate--tetrahydrofolate ligase K01938; Psort location: Cytoplasmic, score: 7.50.
     
 0.818
KXA16199.1
DNA topoisomerase I; KEGG: gvh:HMPREF9231_1284 0. topA; DNA topoisomerase I K03168; Psort location: Cytoplasmic, score: 9.67.
       0.697
KXA15536.1
NAD+ synthase; KEGG: gvg:HMPREF0421_20632 3.3e-297 nadE; NH(3)-dependent NAD+ synthetase K01950; Psort location: Cytoplasmic, score: 7.50.
  
    0.560
KXA15377.1
Amidohydrolase family protein; KEGG: gvg:HMPREF0421_20749 3.1e-228 pyrC; putative dihydroorotase K01465; Psort location: Cytoplasmic, score: 7.50.
    
 0.556
KXA16200.1
dTMP kinase; KEGG: gvh:HMPREF9231_1283 1.8e-106 tmk; dTMP kinase K00943; Psort location: Cytoplasmic, score: 7.50.
     
 0.530
KXA16201.1
KEGG: gvh:HMPREF9231_1282 1.2e-185 putative DNA polymerase III, delta' subunit; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.
       0.500
IleS
isoleucine--tRNA ligase; KEGG: gvh:HMPREF9231_1070 0. ileS; isoleucine--tRNA ligase K01870; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.408
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.