STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16182.1RNA methyltransferase, TrmH family, group 3; KEGG: gvg:HMPREF0421_20191 7.9e-184 RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase; Psort location: Cytoplasmic, score: 7.50. (360 aa)    
Predicted Functional Partners:
KXA15841.1
Ribosomal protein L11; KEGG: pmj:P9211_02221 4.2e-43 rplK; 50S ribosomal protein L11 K02867; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.858
KXA16383.1
cysteine--tRNA ligase; KEGG: gva:HMPREF0424_0329 3.4e-231 cysS; cysteine--tRNA ligase K01883; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.857
KXA16980.1
KEGG: gvh:HMPREF9231_1036 1.1e-127 RluA family pseudouridine synthase K06180; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.830
RplQ
Ribosomal protein L17; KEGG: apb:SAR116_2416 1.9e-22 50S ribosomal protein L17 K02879; Psort location: Cytoplasmic, score: 9.67.
  
 
 0.819
RplC
KEGG: apb:SAR116_2391 1.6e-43 50S ribosomal protein L3 K02906; Psort location: Cytoplasmic, score: 9.67.
 
 
 
 0.818
KXA17195.1
Iojap-like protein; KEGG: mul:MUL_3692 2.8e-21 nadD; bifunctional nicotinate-nucleotide adenylyltransferase NadD/hypothetical protein; K00969 nicotinate-nucleotide adenylyltransferase; Psort location: Cytoplasmic, score: 7.50.
   
 
 0.811
KXA15702.1
Ribosomal protein L15; KEGG: apb:SAR116_2410 9.9e-19 50S ribosomal protein L15 K02876.
  
 
 0.809
KXA15680.1
Ribosomal protein L13; KEGG: apb:SAR116_0493 9.2e-32 50S ribosomal protein L13 K02871; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.808
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.807
KXA16310.1
Ribosomal protein L21; KEGG: apb:SAR116_1856 4.6e-14 50S ribosomal protein L21 K02888.
   
   0.803
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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