STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15897.1TIGR03943 family protein; Psort location: CytoplasmicMembrane, score: 9.35. (271 aa)    
Predicted Functional Partners:
KXA15898.1
Putative permease; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.983
KXA15899.1
Carbonate dehydratase; KEGG: gvh:HMPREF9231_0030 6.3e-104 cah; carbonate dehydratase K01673; Psort location: Cytoplasmic, score: 9.97.
       0.786
KXA15896.1
Hypothetical protein; KEGG: hpa:HPAG1_1423 1.1e-49 hemolysin domain-containing protein K00088; Psort location: CytoplasmicMembrane, score: 9.99.
       0.589
KXA15895.1
Ferritin-like protein; KEGG: gvg:HMPREF0421_20160 7.6e-76 DNA protection during starvation protein K04047; Psort location: Cytoplasmic, score: 9.97.
       0.574
KXA15900.1
KEGG: gvh:HMPREF9231_0029 0. ppc; phosphoenolpyruvate carboxylase K01595; Psort location: Cytoplasmic, score: 7.50.
       0.452
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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