STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15900.1KEGG: gvh:HMPREF9231_0029 0. ppc; phosphoenolpyruvate carboxylase K01595; Psort location: Cytoplasmic, score: 7.50. (918 aa)    
Predicted Functional Partners:
KXA15901.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.838
KXA15260.1
Triose-phosphate isomerase; KEGG: gvg:HMPREF0421_20768 1.5e-127 tpiA; triose-phosphate isomerase K01803; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.814
Pgk
Phosphoglycerate kinase; KEGG: gvg:HMPREF0421_20767 1.5e-203 pgk; phosphoglycerate kinase K00927; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.795
Gap
KEGG: gvg:HMPREF0421_21168 2.0e-185 gap; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) K00134; Psort location: Cytoplasmic, score: 9.97.
     
 0.723
KXA15317.1
KEGG: gvg:HMPREF0421_20813 7.1e-112 rpe; ribulose-phosphate 3-epimerase K01783; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.691
SecG
Preprotein translocase, SecG subunit; Psort location: CytoplasmicMembrane, score: 9.55.
       0.639
KXA15257.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.629
KXA16340.1
Putative biotin--[acetyl-CoA-carboxylase] ligase; KEGG: gvh:HMPREF9231_1192 1.3e-66 hypothetical protein; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase; Psort location: CytoplasmicMembrane, score: 8.16.
       0.624
KXA15256.1
Hypothetical protein; KEGG: apb:SAR116_1265 2.1e-39 P-loop-containing kinase K06958; Psort location: Cytoplasmic, score: 7.50.
       0.623
AckA
Acetate kinase; KEGG: gvg:HMPREF0421_20574 6.8e-217 ackA; acetate kinase K00925; Psort location: Cytoplasmic, score: 9.97.
      
 0.614
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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