STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GyrBKEGG: gvh:HMPREF9231_0006 0. gyrB_1; DNA gyrase subunit B K02470; Psort location: Cytoplasmic, score: 9.97. (683 aa)    
Predicted Functional Partners:
GyrA
KEGG: gvh:HMPREF9231_0007 0. gyrA_1; DNA gyrase subunit A K02469; Psort location: Cytoplasmic, score: 9.97.
 0.999
KXA15525.1
KEGG: gvh:HMPREF9231_0933 0. gyrA_2; DNA gyrase subunit A K02469; Psort location: Cytoplasmic, score: 9.97.
 0.998
KXA15925.1
DNA replication and repair protein RecF; KEGG: pen:PSEEN0003 0.00079 recF; recombination protein F K03629; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.963
KXA15926.1
DNA polymerase III, beta subunit; KEGG: gvh:HMPREF9231_0002 9.1e-183 dnaN; DNA polymerase III subunit beta K02338; Psort location: Cytoplasmic, score: 9.67.
  
 
 0.960
KXA15928.1
KEGG: pmj:P9211_05681 2.1e-71 dnaA; chromosomal replication initiation protein K02313; Psort location: Cytoplasmic, score: 9.97.
  
 0.938
KXA15924.1
Hypothetical protein.
   
 
 0.883
KXA15921.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.844
KXA17243.1
SsrA-binding protein; KEGG: apb:SAR116_0541 4.2e-27 SmpB protein K03664; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.824
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.823
KXA15205.1
DNA primase; KEGG: gvh:HMPREF9231_0661 0. dnaG; DNA primase K02316.
  
 
 0.809
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.