STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15930.1KEGG: gvg:HMPREF0421_20124 1.7e-55 rnpA; ribonuclease P K03536; Psort location: Cytoplasmic, score: 7.50. (183 aa)    
Predicted Functional Partners:
KXA15931.1
Hypothetical protein; KEGG: pmj:P9211_04091 4.1e-13 ribonuclease P K08998; Psort location: CytoplasmicMembrane, score: 9.55.
       0.893
KXA15932.1
Membrane protein insertase, YidC/Oxa1 family; Psort location: CytoplasmicMembrane, score: 10.00.
       0.893
RpmH
Ribosomal protein L34; KEGG: rak:A1C_04775 2.1e-09 rpmH; 50S ribosomal protein L34 K02914; Psort location: Cytoplasmic, score: 9.67.
     
 0.890
KXA15933.1
r3H domain protein; KEGG: sgg:SGGBAA2069_c20720 1.8e-12 jag; Jag family RNA-binding protein K06346; Psort location: Cytoplasmic, score: 7.50.
       0.794
KXA15934.1
KEGG: gvg:HMPREF0421_20121 4.7e-99 gidB; 16S rRNA methyltransferase GidB K03501; Psort location: Cytoplasmic, score: 7.50.
       0.747
KXA15935.1
Sporulation initiation inhibitor protein Soj family protein; KEGG: bde:BDP_2273 5.6e-119 parA; chromosome partitioning protein PrA K03496; Psort location: CytoplasmicMembrane, score: 8.78.
       0.605
KXA15928.1
KEGG: pmj:P9211_05681 2.1e-71 dnaA; chromosomal replication initiation protein K02313; Psort location: Cytoplasmic, score: 9.97.
 
     0.548
KXA15936.1
ParB-like protein; KEGG: pub:SAR11_0354 2.1e-42 parB; chromosome partitioning protein K03497; Psort location: Cytoplasmic, score: 9.97.
       0.512
KXA15136.1
Pseudouridylate synthase; KEGG: gvg:HMPREF0421_20849 8.7e-130 rluB; ribosomal large subunit pseudouridine synthase B K06178; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.408
KXA16297.1
KEGG: bde:BDP_1927 1.7e-149 Maf-like protein K06287; Psort location: Cytoplasmic, score: 7.50.
     
 0.404
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.