STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15949.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 8.16. (478 aa)    
Predicted Functional Partners:
KXA15370.1
Putative glycoprotease GCP; KEGG: gvg:HMPREF0421_20740 4.8e-184 gcp; O-sialoglycoprotein endopeptidase K01409; Psort location: Cytoplasmic, score: 7.50.
  
 0.997
KXA15948.1
KEGG: gvg:HMPREF0421_20105 5.3e-194 ABC transporter ATP-binding protein K10243; Psort location: CytoplasmicMembrane, score: 9.96.
  
    0.829
KXA15946.1
KEGG: bbp:BBPR_1827 4.0e-77 protein-disulfide isomerase.
 
     0.738
KXA15963.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.669
KXA17250.1
Single-strand binding family protein.
  
    0.652
KXA16269.1
ABC transporter, solute-binding protein; KEGG: ebe:B21_03866 6.5e-10 malE; malE, subunit of maltose ABC transporter K10108.
       0.639
KXA16271.1
ABC transporter, permease protein; KEGG: rcu:RCOM_1803670 4.0e-31 L-arabinose transport system permease protein araP, putative; Psort location: CytoplasmicMembrane, score: 10.00.
       0.633
KXA16182.1
RNA methyltransferase, TrmH family, group 3; KEGG: gvg:HMPREF0421_20191 7.9e-184 RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.629
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
       0.617
KXA16693.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.610
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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