STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA15956.1Mur ligase middle domain protein; KEGG: bbb:BIF_00786 2.9e-131 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Psort location: Cytoplasmic, score: 7.50. (459 aa)    
Predicted Functional Partners:
KXA15957.1
CobB/CobQ-like protein; KEGG: ssr:SALIVB_1273 1.1e-40 cobyric acid synthase K07009; Psort location: Cytoplasmic, score: 7.50.
 
 0.999
KXA15955.1
Replicative DNA helicase; KEGG: gvg:HMPREF0421_20092 5.1e-244 dnaB; replicative DNA helicase DnaB K02314; Psort location: Cytoplasmic, score: 7.50.
     
 0.928
KXA15954.1
MATE efflux family protein; KEGG: pfe:PSF113_0668 9.3e-23 DNA-damage-inducible protein F K03327; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.686
KXA17021.1
KEGG: gvh:HMPREF9231_1083 1.4e-177 putative undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; Psort location: CytoplasmicMembrane, score: 8.78.
  
 
 0.674
Def
Peptide deformylase; KEGG: gvg:HMPREF0421_20431 1.5e-111 def; peptide deformylase K01462; Psort location: Cytoplasmic, score: 7.50.
     
 0.652
KXA15912.1
Kinase domain protein; KEGG: gvh:HMPREF9231_0017 0. putative serine/threonine-protein kinase PrkC; K08884 serine/threonine protein kinase, bacterial; Psort location: CytoplasmicMembrane, score: 9.51.
     
 0.644
KXA15971.1
KEGG: gvg:HMPREF0421_20040 8.9e-176 asd; aspartate-semialdehyde dehydrogenase K00133; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.637
KXA17020.1
KEGG: gvh:HMPREF9231_1082 1.3e-224 murC; UDP-N-acetylmuramate--L-alanine ligase K01924; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.600
KXA17025.1
KEGG: gvh:HMPREF9231_1087 5.0e-198 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929; Psort location: Cytoplasmic, score: 9.97.
  
  
0.593
RpoD
RNA polymerase sigma factor RpoD; KEGG: lru:HMPREF0538_21998 4.6e-92 rpoD; DNA-directed RNA polymerase sigma subunit RpoD K03086; Psort location: Cytoplasmic, score: 9.97.
     
 0.589
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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