STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UppKEGG: gvg:HMPREF0421_20089 1.5e-109 upp; uracil phosphoribosyltransferase K00761; Psort location: Cytoplasmic, score: 7.50. (212 aa)    
Predicted Functional Partners:
KXA17057.1
KEGG: gvh:HMPREF9231_0973 3.1e-276 GMP synthase; K01951 GMP synthase (glutamine-hydrolysing); Psort location: Cytoplasmic, score: 7.50.
  
  
 0.975
KXA15135.1
Ribosome biogenesis GTPase Der; KEGG: bbp:BBPR_1002 5.1e-292 GTP-binding protein K03977; Psort location: Cytoplasmic, score: 9.95.
  
 
 0.868
KXA15376.1
KEGG: gvg:HMPREF0421_20748 8.6e-194 pyrB; aspartate carbamoyltransferase K00609; Psort location: Cytoplasmic, score: 9.97.
   
  
 0.817
KXA15964.1
Hydrolase, NUDIX family; KEGG: bnm:BALAC2494_00920 1.2e-75 Hydrolase; Psort location: Cytoplasmic, score: 7.50.
  
    0.795
KXA16178.1
Cytidine and deoxycytidylate deaminase zinc-binding region; KEGG: gvg:HMPREF0421_20196 2.4e-70 fca1; putative cytosine deaminase; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.740
KXA15313.1
UMP kinase; KEGG: gvh:HMPREF9231_0762 1.4e-122 pyrH; UMP kinase K09903.
   
 
 0.736
KXA15724.1
Amidohydrolase family protein; KEGG: bde:BDP_0473 1.8e-177 hydrolase.
  
 
 0.726
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.695
RpsL
Ribosomal protein S12; KEGG: apb:SAR116_2386 2.0e-45 30S ribosomal protein S12 K02950; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.671
KXA15536.1
NAD+ synthase; KEGG: gvg:HMPREF0421_20632 3.3e-297 nadE; NH(3)-dependent NAD+ synthetase K01950; Psort location: Cytoplasmic, score: 7.50.
     
 0.668
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.