STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GatBKEGG: gvg:HMPREF0421_20063 4.8e-264 gatB; glutamyl-tRNA(Gln) amidotransferase subunit B K02434; Psort location: Cytoplasmic, score: 9.97. (499 aa)    
Predicted Functional Partners:
GatA
KEGG: gvg:HMPREF0421_20064 1.2e-269 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433; Psort location: Cytoplasmic, score: 9.97.
 0.999
GatC
KEGG: gvh:HMPREF9231_1347 4.5e-46 gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C K02435; Psort location: Cytoplasmic, score: 7.50.
  
 0.999
AspS
aspartate--tRNA ligase; KEGG: gvg:HMPREF0421_20832 0. aspS; aspartate--tRNA ligase K01876; Psort location: Cytoplasmic, score: 10.00.
 
 0.994
KXA17057.1
KEGG: gvh:HMPREF9231_0973 3.1e-276 GMP synthase; K01951 GMP synthase (glutamine-hydrolysing); Psort location: Cytoplasmic, score: 7.50.
  
 
 0.886
GltX
glutamate--tRNA ligase; KEGG: gvh:HMPREF9231_0209 6.5e-276 gltX; glutamate--tRNA ligase K01885; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.868
KXA15995.1
Acetyltransferase, GNAT family; KEGG: bde:BDP_1987 2.0e-84 acetyltransferase.
       0.858
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.843
KXA16011.1
Putative glutamyl-queuosine tRNA(Asp) synthetase; KEGG: gvh:HMPREF9231_1361 1.8e-177 tRNA ligase class I, catalytic domain protein; K01885 glutamyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.830
KXA15994.1
Hypothetical protein.
       0.795
KXA16003.1
RNA methyltransferase, TrmH family; KEGG: bbp:BBPR_1680 2.4e-95 23S rRNA methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
   0.761
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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