STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16019.1Hypothetical protein; KEGG: bde:BDP_1936 1.2e-82 thioredoxin domain-containing protein K05838; Psort location: Cytoplasmic, score: 7.50. (339 aa)    
Predicted Functional Partners:
KXA15937.1
KEGG: gvh:HMPREF9231_1402 2.7e-142 trxB; thioredoxin-disulfide reductase K00384; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.984
KXA16947.1
Low molecular weight phosphotyrosine protein phosphatase; KEGG: gvg:HMPREF0421_20549 8.4e-93 ptpA; putative protein-tyrosine-phosphatase K01104; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.883
KXA16018.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.879
Gap
KEGG: gvg:HMPREF0421_21168 2.0e-185 gap; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) K00134; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.860
FusA
Translation elongation factor G; KEGG: bnm:BALAC2494_00509 0. Protein-synthesizing GTPase K02355; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.850
KXA16016.1
KEGG: gvg:HMPREF0421_20034 1.4e-147 peptidyl-prolyl cis-trans isomerase.
   
 
 0.842
KXA16017.1
Hypothetical protein; KEGG: ddi:DDB_G0292358 1.2e-12 ino80; CHR group protein; K11665 DNA helicase INO80; Psort location: Cytoplasmic, score: 9.64.
       0.840
AtpA
ATP synthase F1, alpha subunit; KEGG: gvh:HMPREF9231_0137 1.3e-286 atpA; ATP synthase F1 subunit alpha K02111; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.838
KXA15300.1
Peroxiredoxin; KEGG: gvg:HMPREF0421_20840 8.8e-98 ahpC; peroxiredoxin K03386; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.837
AtpD
ATP synthase F1, beta subunit; KEGG: gvg:HMPREF0421_20003 1.5e-260 atpD; ATP synthase F1 sector subunit beta K02112; Psort location: CytoplasmicMembrane, score: 8.78.
  
 
 0.826
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.