STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16042.1Efflux ABC transporter, permease protein; KEGG: ase:ACPL_5130 3.6e-15 salY; Macrolide export ATP-binding/permease protein macB K02004; Psort location: CytoplasmicMembrane, score: 10.00. (413 aa)    
Predicted Functional Partners:
KXA16043.1
KEGG: gvg:HMPREF0421_21352 1.1e-143 ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 9.51.
 0.990
KXA16041.1
Efflux ABC transporter, permease protein; KEGG: ase:ACPL_5143 7.8e-11 Macrolide export ATP-binding/permease protein macB 1 K02004; Psort location: CytoplasmicMembrane, score: 10.00.
     0.986
KXA16040.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.981
KXA16039.1
Hypothetical protein.
 
  
 0.958
KXA16038.1
Iron permease FTR1 family protein; KEGG: ccv:CCV52592_0433 1.6e-50 fumarate hydratase class II K01679; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.948
KXA16353.1
KEGG: bde:BDP_1015 1.7e-55 ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 9.99.
 0.882
KXA16044.1
Hypothetical protein.
       0.838
KXA15420.1
KEGG: gvg:HMPREF0421_20698 1.1e-138 ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 9.96.
 0.795
KXA16352.1
KEGG: crd:CRES_0317 7.1e-07 ABC transporter ATP-binding protein/permease K02004; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.770
KXA15969.1
KEGG: gvg:HMPREF0421_20038 3.6e-117 ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.
 
 0.706
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.