STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ValSAnticodon-binding domain protein; KEGG: gvh:HMPREF9231_0202 0. valS; valine--tRNA ligase K01873; Psort location: Cytoplasmic, score: 9.97. (923 aa)    
Predicted Functional Partners:
ArgS
arginine--tRNA ligase; KEGG: gvh:HMPREF9231_0203 0. argS; arginine--tRNA ligase K01887; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.951
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.932
KXA15307.1
histidine--tRNA ligase; KEGG: gvg:HMPREF0421_20833 1.3e-229 hisS; histidine--tRNA ligase K01892; Psort location: Cytoplasmic, score: 10.00.
 
 
 0.903
IleS
isoleucine--tRNA ligase; KEGG: gvh:HMPREF9231_1070 0. ileS; isoleucine--tRNA ligase K01870; Psort location: Cytoplasmic, score: 9.97.
 
 
0.891
KXA16383.1
cysteine--tRNA ligase; KEGG: gva:HMPREF0424_0329 3.4e-231 cysS; cysteine--tRNA ligase K01883; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.881
LeuS
leucine--tRNA ligase; KEGG: gva:HMPREF0424_0944 0. leuS; leucine--tRNA ligase K01869; Psort location: Cytoplasmic, score: 9.67.
   
 
0.873
KXA17604.1
tyrosine--tRNA ligase; KEGG: gvh:HMPREF9231_0961 5.3e-226 tyrS; tyrosine--tRNA ligase K01866; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.852
ThrS
threonine--tRNA ligase; KEGG: gvg:HMPREF0421_20690 0. thrS; threonine--tRNA ligase K01868; Psort location: Cytoplasmic, score: 10.00.
  
  
 0.851
KXA17057.1
KEGG: gvh:HMPREF9231_0973 3.1e-276 GMP synthase; K01951 GMP synthase (glutamine-hydrolysing); Psort location: Cytoplasmic, score: 7.50.
  
  
 0.844
KXA16855.1
Protein FolC; KEGG: gvg:HMPREF0421_21186 4.8e-248 folC; tetrahydrofolate synthase K11754; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.815
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.