STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16075.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (47 aa)    
Predicted Functional Partners:
ArgS
arginine--tRNA ligase; KEGG: gvh:HMPREF9231_0203 0. argS; arginine--tRNA ligase K01887; Psort location: Cytoplasmic, score: 9.97.
       0.773
ValS
Anticodon-binding domain protein; KEGG: gvh:HMPREF9231_0202 0. valS; valine--tRNA ligase K01873; Psort location: Cytoplasmic, score: 9.97.
       0.689
KXA16073.1
ABC transporter, substrate-binding protein, family 5; KEGG: gwc:GWCH70_0479 3.9e-25 4-phytase K02035.
       0.514
KXA16077.1
Branched-chain amino acid transport system II carrier protein; KEGG: mzh:Mzhil_1399 0.0011 cobalamin 5'-phosphate synthase; K02233 adenosylcobinamide-GDP ribazoletransferase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.429
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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